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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008267 Open in IMG/M |
| Scaffold ID | Ga0114364_1001016 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33199 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (76.47%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002420 | Metagenome / Metatranscriptome | 560 | Y |
| F008972 | Metagenome / Metatranscriptome | 325 | Y |
| F011282 | Metagenome | 292 | Y |
| F013503 | Metagenome | 270 | Y |
| F042803 | Metagenome | 157 | Y |
| F045609 | Metagenome | 152 | Y |
| F100698 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114364_100101617 | F008972 | AGGA | MTDKTVETPKTREEILAMSLEAREAEVMNYQINIDNYAIALEEIGNLPPDERSELSAFTDQLRTLLTSEKLEQKKAKIMLSVIKRQVG* |
| Ga0114364_100101621 | F100698 | N/A | MGFLIAFLSLVIVFAILLPIIGFMYLDILETKAETKRQQAVVQRLINKAEENK* |
| Ga0114364_100101624 | F002420 | GAGG | MSFRETTIKYIKDILRAKTISEVICAELQDAHLRKLEAETAAEYSDAAIKFNDRRIERLEHRLFQHKQDNN* |
| Ga0114364_100101629 | F011282 | N/A | MKKYKNIVVITGTYKTKDGQEKKRYQNIGSVFVDDNDNLKIKMDSMPLVDGGWNGWANCYDLEEKTNKHEDRHDDIPF* |
| Ga0114364_100101634 | F042803 | GGAG | MLDDGDEGEFITYVIWDEVTVKWSWSEPEDYEIDGYFDIFVFKDGLDITYDISKLHYKWIEAEVKKYAGYEPPSHQRVASVINSLANNSF* |
| Ga0114364_100101636 | F013503 | GAGG | MAITKFTQQKDDAFDDIQRLMCSVHNCPNRWSVHMEGEKPKCSKHQWEKNSSDYKRPLNVKPESQSIQQWYEKENF* |
| Ga0114364_100101638 | F045609 | N/A | MTKEEAHKLLDQHKETHQLSYVDTTTALRLTGDYEGNGSAGMGEEIPQESERPWENQSIGMVVAGLLRHRKTPWISRRR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |