Scaffold Ga0114364_1000052

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1000052
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63096
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001530	Metagenome / Metatranscriptome	676	Y
F002370	Metagenome / Metatranscriptome	566	Y
F009953	Metagenome / Metatranscriptome	310	Y
F057982	Metagenome	135	N
F065560	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_100005232	F002370	AGGAG	MDAKKAVRKHEQNMHPGKTPTKLRAGGKTNSDMLKMGRNLAKIANQKSPGRKG*
Ga0114364_100005243	F001530	N/A	MQITKEFLEAEIADLRKEAGRAEVFLLKAQGTIEAYQMLINRLEAPEPEQQNGDAIRR*
Ga0114364_100005250	F009953	AGGA	LNDYKLLSLTVKEIQKLKQEREAYVAAGRVDHIEEYRRICGVIQGLNYAENIIEDLVQKMEKSDD*
Ga0114364_100005273	F057982	GGAGG	MTEFKYRITYNNGNFADWDAMQKELAWAYKWGIFLYAIRLNIGAWRAGHKSFKYWLYVLRRKPKITRERT*
Ga0114364_100005274	F065560	GGAG	MIDDPEDEAFNEIERQAQQRKEAVKASVSLNPYRSQVIEEVAQHIEKMKGFGQDTVQSFATYIRGLK*