Scaffold Ga0114364_1000039

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1000039
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 146212
• Total Scaffold Genes: 235
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (52.34%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F021050	Metagenome	220	Y
F021295	Metagenome	219	N
F022410	Metagenome / Metatranscriptome	214	Y
F023035	Metagenome	211	Y
F038992	Metagenome	164	Y
F045091	Metagenome	153	N
F050978	Metagenome	144	Y
F051079	Metagenome	144	N
F072280	Metagenome	121	Y
F095379	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_1000039146	F006099	N/A	VSTVAQSPKENMTSARILYLARYRVPHAIMSLQPEFANNLIGIDRTCIASPVPQEELWPVFEKYGIDTTRLDYAPDSDIYRIYPEVNNWVFEGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIKPYEPIKDGVLNFQVLENERHSWGYYESIKNGLGFDRLTPHCFISENVPVLKQDFTDLVKFLEEKHQKKWLDAMIDSCPPEATVPPWGNGELIRWFSEYEFIGNWIMSRRPITMEFQRRYHYDNMEKIGDFDPAYHTAVCDAVPDLRLSLQMDWDQKEVVNFDYYMNKIRETLARQS*
Ga0114364_1000039148	F004863	AGGA	MKLMVAGCSFSAVSKTLPGTAWSELLAQQLGDWELINLARQGCSNGGIRIQIDEIRRQRPDFAVIMPTFWDRMEIPADSVPYNWNQKPSSGENPPLEQHLQNRKLGNGYCREDGIRNVNYGTEPSNMICETIFTLAENFDHPYRQGRITRQAQTGVRHWIDSIYDNAWKKQCDEWIMRDGITMMYLDDIKFIVCPNLLWPFDPNNQTQWREAFPSIVPDHYINLDSARSPQAICGNNPFTGEDPGYHSGPAGQKIIAKNFYQTWLNHFK*
Ga0114364_100003915	F038992	GGA	MNTIEHIINRIKRLEQFIVKVSVPEDFAFSGAVPFDIEIAGSTAMVTVWAASEAEAKRRAEEFFQNTP*
Ga0114364_1000039162	F072280	GAGG	LYKVELDDRSSLYYAQYEWCITINISEAVCLRNLDASQFERAIVNAKHWAESDRWSNRAWSITKETALRETREVLLSEIAPFKTVVSFMTVSVYTNHRGLADRLVTLGNDGVRIRLVRQAVLTRPVNVVQLRESKYAYRTYLRERKYGLEQRTMLVNFLNSRKDTLQPCDALIAWLKGSSSFRYNLNYSRAHYFVDHDHPNEGTMISLVMPGIVRKTMPIQTTK*
Ga0114364_1000039168	F023035	GAG	MSPVVKTLLLILGTILAVFAVPAVLIVFHAYLNAFFAIVLFVTCFVLFAYYSYQELLLEFRQAHMEEEQVMARFAGDPEKIRFYRGFKKHFDGDLDLEQLEQWFVKHPRKH*
Ga0114364_1000039189	F021050	GGA	MVTKHWDANRVISECQQMYFGANDPHVTGWVNWPCKQDLYRVKFAVDEMLAKTSQFSGEAEWLLEQEKDKMWKRLTSR*
Ga0114364_1000039210	F095379	GAG	MTKTHHFDSFLTVLESKKLSTSGGRKTNCNLIGSSTADWYLVQLNKTSTRDTKRCLSKQALVFERGSRKVSSLTTRIGQAHFSGRELVLNEYAKEARGLSMLISTPNLST*
Ga0114364_1000039216	F021295	N/A	MQLKVPTPNTPGSYNAVIDRVFYWLLKRDNYCMHEFEDDPIYEYAKSVMFQIMTVLYLNGRTEAHVGAIMRLLGVDEEHARLHDDERIELDENFVKMAVALNMNELTSVQIPQGTTIH*
Ga0114364_1000039228	F051079	AGGA	MNEWDRNNLHFILDSDEETLEDFYSWATTDDLAYALSLVREARTELLIQEADILDEILTNATADDVADACSVLRKFQL*
Ga0114364_1000039232	F050978	N/A	MDTVNYIRLDCGTQQALAYKYQLDLDGLVVNQDYEWRYQKPVYDEFAWTDSEVSNVTFTFRNPSLATFYQLKWAR*
Ga0114364_100003989	F022410	AGG	MMRFTVEWHDKAERWDVVRWSETVEGVYAGTTVDRCSVLEDAEEICAYHTDMMNPALWADVERKFDRETA*
Ga0114364_100003995	F045091	GGA	MLNKLALTQELITRYPDAPTLDDAMRTWWQNIRDDGGLRLTYEGFYVFENLLELSSYSFDLPEKLLTPKNLIALDRRMTCPYYMINNRKLNKLIMFGSKEAMMAVLHGDMQRFITSLSY*