Scaffold Ga0114363_1034572

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1034572
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2105
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F003182	Metagenome / Metatranscriptome	502	Y
F005503	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10345722	F005503	GGAG	MTTSEVGLFVLMAIACILWAICSYAVGYKEGHKEGYQRGKAVGRHISAQAVK*
Ga0114363_10345723	F001897	AGGCGG	MAFMDSYEGNKQRTDRWIATYPQGRLETLIVEFNAEKGYVLVQAKAFRNQLETEPAGVDYAHGYLAAYPEKMRRWMIEDTCTSALMRVMALVLGGAEKATQEVMAQVNGKAPKAMDYDYWATKFGDVPSYQTRDEAEEAEPLAWETPEPKAFTAETTPSCSHGSMRWNQSKPDAPKAWAGYFCNEKIKEKQCKPTWYVLTSDGTFKPQV*
Ga0114363_10345724	F000403	AGG	MSDYIEIIHPQSMTAKLLCDGVLVEEYKIEQCDKCSQLRRLDAFGYQKGYDRTENIIWFCGDCR*
Ga0114363_10345725	F000903	N/A	MIDRIEEVQCMIAAISHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEMVVAKRLGYDYEPGITWDKSKADVGEHIEVKWSANPNSNLWIQESDREDRDIAVLVTGNAPKMHIVGWMPVAVAKKPRYKNTSQNNWTVPQVNLQPIETLIRSNYAHPSI*
Ga0114363_10345726	F003182	AGGAG	MHILQFDCAICKKLYGKPQQRFGLKKGAELTEHEWFAQCMGCGTFSIKIVDDARIAELSQ