Scaffold Ga0114363_1029962

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1029962
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6197
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004430	Metagenome / Metatranscriptome	438	Y
F012648	Metagenome / Metatranscriptome	278	Y
F013758	Metagenome	268	Y
F025011	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_102996210	F004430	GGA	MATGAEVLTMLIPTGGWAISGNDFTGITFIEAKPITKAAFEAGFAQYDAWKADQDAKKASDKSALLERLGITADEAALLLS*
Ga0114363_10299622	F025011	N/A	VLGVSVALYDNNYLDEVINTAEAVILPMLVANVSAVNAYKLEANVATYYTARGHYFVTGQSIVVAGLPAPFSATVTVVNTNTTLDASLGNFYFTAAITNADVTLRPILTNRVSTLLMPYLDVETVCQ*
Ga0114363_10299625	F012648	GGAG	MQQNITITYQDGSEAEYTIRPPDYARWEMTTKKVISQFGGMWDILYVAHLAYKRDAGSKTTKPFEAWMESVSDVEVGDGDPKATSAEVSAD*
Ga0114363_10299628	F013758	GGCGG	MSAYTPVYKVTSGRTDVNSQPVAGYCQVQLINLNNSAYDFTVGTGITVEVTDSTATFVPIFGGYISDFTTTVNAVGTLAATTVVQITALGALSKLTKFIDPGVLSSDQDGDQIYDLLDNYLLGEWQDVPAAQTWATYDATETWAEALNLGLGEIDRPGDFLMIARTSNETDLYSLATEIATSALGLLYEDANGNIGYADSTHRQDYLAAEGYTTLDANHANGAGLSVTTRVGDIRNKFAITYGTSGQHTYTAEDAQSIIDYGLYAQSFTSRIKDAPDAELYADRLIALRAKPYAKFQNITFELGNPEIDDSDRDALINIFTGLPVWIQNLPPNISEGSFEGYVEGWTFNATYNNLTVTFNASPVNFSQVAVKWESVNPAEAWNTLSSTLTWLDAIGAVA*