Scaffold Ga0114363_1027367

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1027367
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3728
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012105	Metagenome	283	N
F036604	Metagenome	169	Y
F041721	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10273676	F036604	AGGAGG	MGLITTAEQLAEAIVTDPERVAACLGRINRFGGQVPHCTVLRHSLHVFERIDADPDSLDAARLWALLHDAHEVLTGDVVRPYVTARLRMDQAAIDAVIVRRLPLCLPQPESMSWEAVIAADRAVGAWELEQIQQGRAPYELYTFAVASWARLVRGFIERRAGT*
Ga0114363_10273677	F041721	GGAGG	MSDSQLESLRAFAIRERGHLLEHCPPIPVVSDWFLEVDRDGRITGEVISGACTSHVQYDPRYRAVFRHDCTFYSSGLGEWLHMVETFWRQTLRQWQAYRHLGELLQAAEDCTPETHEQAWRAVYECLGWNPDTAREQYLERRAGK*
Ga0114363_10273678	F012105	GGAGG	MIPLAIRRHNLQDLTLGQSVVLTVPSCEERQIRRAVGTLNAERSDGMRLKTLRTPDGLRVWLVESVDIADCPEWQTGKSKRFPGRDPVAVQKSVVKLNEWARVMRRAYRFRVVVRDSVPIVLKLPKNKTLRIRREAELLRIVKAVERLRAGQGTVVRDVERRDIVRAKWRMKKRGIRFVVRHIGESVWNVERVTE*