Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1024985 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2835
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2835

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10249851	F057213	N/A	ALAYVARTANQPRGGNAQPMEVDTTDNSRMGRDVVDDNTDLRDQFMKLQRNLANKDRALRMKELDTEILRNMGDRFDNDLQDYALQKIKSNIQFKRDGSYSIINSKGQERYGMDGNPLTINGLIEEVARGNPKLLKQSQSQGGSGLRMGQSW*
Ga0114363_10249852	F011761	GAGG	MAYVLNGAQNEADGFTTAIANFALRAMHESTGLVDYTTVVAPTQGNEYLVPQFAPITYQDYNPNGAPNTAGFGANGATEQNPALGQGNITATPAVAATAFDIFYSWTTSFQLAATLGAELGESYGEKVDQRVCDAFLSFKATPSNSLYSPTPLDGFARPTQLGAMELIEAGGNTANATTGFTATTVLELIRNVKQNYKVARLPGSPVIILDSNGSATAANVSAAGGSGSTMTRLLAELTGGAVNQPGAYGGTSLSALGNELLASGRLDNVYGCKVGFTTFLPSATRTVAGNANANVIVGAYFHETALVTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINIVQD*
Ga0114363_10249853	F002260	AGGA	MSVPYQRISNATVQDIIFYDPAAERRASQMQVNWDDYFKVGSQEILYKLEFGWWPKYCDTTFGASYYQNLPNGQLISSFNPSLLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNDVDNVNFNHALRRFESEWEKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNNDRRYF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1024985

Overview

Ecosystem & Geography

Associated Families

Sequences