Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1022209 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2780 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F005697 | Metagenome / Metatranscriptome | 392 | Y |
F009503 | Metagenome / Metatranscriptome | 317 | Y |
F014089 | Metagenome / Metatranscriptome | 266 | Y |
F021065 | Metagenome / Metatranscriptome | 220 | Y |
F025683 | Metagenome / Metatranscriptome | 200 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_10222092 | F025683 | GGAG | MELDLLDPATLGRLVGILVLMVMGGAVGYAKGFKDGKREGLARRKAMIRHAANKAVK* |
Ga0114363_10222093 | F005697 | AGGCGG | MGFLDNYEASRERLERWLKTYPQGRIETRIVEFSAEKGYVLVEARAFKGIDSVLPDGVDFAFGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTREIMEQVEKTPAKVANTDIDYWTTKHGEIPSYKTAAEAEQSGIPSLGSSMDEVAKQLGGQLVQEAPQCSHGHMIWKQAHEGAPKNWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV* |
Ga0114363_10222094 | F014089 | GGA | MSDLVEIIYPQSMTAKLLQDGEVIAEYKVEQCDGCAKIIKLDAFGYKVGQAGEKLAWLCGGCR* |
Ga0114363_10222095 | F021065 | GGTGG | MKMTLTRAEEFVCHKAALELAKDNNDYWQTREGGYSMDKSFHDLIAQDAQSIGSEWVVAKYLDLPFNPYENKYKIKADVGSHFEVRWTKYVAGHLVVHEYDRPNDVAILVTGESPNYFIAGWIPIAMAKRTKYRHSKQPNWWVTQINLQPIENLRRSNYGQSAI* |
Ga0114363_10222096 | F009503 | GGAG | MDKVQFECRICKKITVQLIHKITDNLPEGVEVIQCTKCEVMGVAQIGTSNANL* |
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