Scaffold Ga0114363_1019140

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1019140
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3045
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F023592	Metagenome / Metatranscriptome	209	Y
F029049	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10191401	F002269	AGGAG	MKEQAIAAAKSYGRASLASVAALYMSGITDYKVLANAFIAGLIGPLLKALQPSEKQLGVGAK*
Ga0114363_10191403	F023592	AGG	MNSLDILIGLAACGMGFMFMVIGYSIGHRQGHGEGFVRGRAIAQALKDKELI*
Ga0114363_10191404	F007029	AGGAG	MGFLDNYEDVNARIKRFRLEFPSGRLVAYIEDLDIIKGTILVKAEAYREYEDHLPSAVDYAFGNVSTYPNNMKKWFIEDTSTSAYGRCIGLLTPSLEHNSRPTAQDMEKVETLPADSDPWSTKASIEDMATMASSILEIGKSLGGELVAEAPRCTHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVLGSDGKWKPQV*
Ga0114363_10191407	F029049	N/A	MSRVAKVILDRSQEITAHRVGLERTIIRNADPTDASNFGQAYKNWHELVWQESESAAAEIAVANYFGDYGFVPAIDNAHDTADVGENIEVKWTKHANGHLIVQNRGPGRPNDVAILVTGFSPVYVLLGWMPISMAKQPRYKHTYQDNYWVPRANLFEMQYLKRSNYGDV*