Scaffold Ga0114363_1016657

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1016657
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7869
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004839	Metagenome / Metatranscriptome	421	N
F010541	Metagenome / Metatranscriptome	302	Y
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_101665716	F014956	N/A	MNIQEFALNASLTVCPSHIVEPFHLKRWWRQRGVGELEKYFCTGKKVKYDDEINWKAISDHKKQMWYDSLNFQINMGHEYSKRQG*
Ga0114363_101665717	F041648	N/A	MENIVSTFTNNGLTRYYEERIKYLEGENERLRNEARADFLTVLDFWIYAQRTIETYVMFHKESNHDHYIEMIKTILESLEYHEEKMMETSINKLRLEIIARCKEAIIKCQQITAAR*
Ga0114363_101665718	F021732	N/A	MITKYTVKCCLDKKRQHFVHVIFSSGFGLYGANKPHHEDDNIEIHGWTFEPEDIDPECRLYPPITRFNLMPLVAENEMDWVILNN*
Ga0114363_10166574	F004839	N/A	MEKNFTNIQFKWTFESIADNIPTIMFLTIVLTYGVNAYLTAIFLPINFWVALAATSILQLGRFAIVFMDFLNPTKGRSPYPPKIALGATIIALIELFFGLQDKYSGSEFITMFFFVGTIVCFGYLLEINFVNKGVEAYGLTEPKVIKRRKRKPVVKIIKEEAPKDFKPYVTSFQTITL*
Ga0114363_10166577	F010541	N/A	METTLYAVMYFGNAKRYQDLNYEIEAFTKREAVEKFYERMRGEDYFPEDEFVYGGLIRDCDGNVIAEAGSESIEYDGGYFYAEPVIE*