Scaffold Ga0114363_1014359

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1014359
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3630
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032560	Metagenome / Metatranscriptome	179	Y
F054853	Metagenome	139	N
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10143591	F086624	N/A	MSEVKKESIGAWKRTTPKGEVINFTINGQRYNMWVNGYKDKPAQPDFKIYEDNYVAPT
Ga0114363_10143592	F032560	N/A	LGKSQNKFIKMKQETYQDLEIGLQNLLPMERQMLLAEVYHYCWYAPEAYTEIKAFLKKWEKECEFKAVFFKQESEDSTNQI*
Ga0114363_10143597	F054853	AGG	MEEQKPHIEPEVSEEAIEWEEAETTTRGDLISCAYYAYSTVEDIDLTLLSRIEANKIRRIKRQSLDIIAEVIGEMHAEIFDLGDEE*