Scaffold Ga0114363_1010634

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1010634
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4376
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F019123	Metagenome / Metatranscriptome	231	Y
F030690	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_101063410	F003066	AGGA	MKKEPVAWLYEEFDVKSGDLKKSYLWSFHPKELSYLNDLKNATHHIKITPLFRGDKIEEYKSMNKYSEATQRLIESNNGL*
Ga0114363_10106345	F030690	AGGA	MQRSEVEIICNHMLGRVIVSCEPLHGDSTIVITLDDDSLIEISGEELSVYGELTPMDD*
Ga0114363_10106346	F002037	GAG	MNKIYWIFIVVMASLAIWGTEKAFSQTTTILAPDGSVTVCQVGSNGIVVCV*
Ga0114363_10106349	F019123	N/A	MDSKPLSQEEIVKIYKEAFGKGDQLVTIDRIFRFARLIEQAHGVKDG*