Scaffold Ga0114363_1009652

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1009652
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4637
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057312	Metagenome / Metatranscriptome	136	Y
F068783	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10096525	F068783	AGCAGG	MPNNVLIKYGSKQTLTCAVASLASDTNLLAGIESSVIDNTTDGFTDIIVSGKLTTGTSPTAARSIEVWAIGWDGANWPDVFDGTSSGETITSSDIKNAICKPVAIMSTNNTSDRTYHFSGVSLRSAFGGCLPSKIVLFPVHNTGVNLNSTAANHELSYYGEYPQIQ*
Ga0114363_10096527	F057312	GGAGG	MSDANTPTEPEPVGCEIFQDALDQLTDELDTICDRIDFNLEQLWICRQAKAQAFGGIEPGRVNMTRQSISGAQRLLQTARSRVHQVIGEIEIVSTPAQQQAVTE*