Scaffold Ga0114363_1006555

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1006555
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5808
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010673	Metagenome	300	Y
F074789	Metagenome	119	Y
F086618	Metagenome	110	N
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100655510	F010673	N/A	MNPKLIPILQRIISRDSVLNAFEPDSLPQSALTYIRSHYLNDNFLWLTPEDQDELETLPPLADNLSESIRPGGGIGNPDSTVYHIFEDGSLWLKTNAYSSVWADARDFAVEIILPRMELTRMDADFLREIGMEGVVESIRDDFFHAFAETLHKSYGIPHCDARGHWDAYARQLGEPERDALELGGRESGVREGHLFAETFKSETINA*
Ga0114363_100655511	F103133	N/A	MRYKIQLETPNGWSNLRESIDGGPYKTCFYPTREIADAAREEFSELSEFLESTRIVPANVPETENIYA*
Ga0114363_100655513	F102590	GGAGG	VKSEFTPGPWRTTATNVRAGDALICYATNHHANAETPEHEKLANARLIAAAPDLLLALERLVHPMADDEDLSFARDCIANARGK*
Ga0114363_10065556	F086618	N/A	MASIQRIETAVSNLINGNLTDARKSARGLTYSDIFDWLTGPVGWPENRSRAYADYLKNRIDFRSFCEASK*
Ga0114363_10065557	F074789	N/A	MQSNIIETFRALESDGQVRLRALPEVESYFDVYGEPDSAQERQEIIDQIERNGCWCVVSEFFADGQWHHADSVGMCAGYENPLNPAENCYVEGLMESAIRALEMQSTEGALI*