Scaffold Ga0114363_1005940

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1005940
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7973
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (17.39%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024311	Metagenome / Metatranscriptome	206	Y
F070098	Metagenome / Metatranscriptome	123	Y
F093532	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100594010	F093532	N/A	MQIEALVSSLVLSGITDNRKLVAAVDNKFHPTNEWEMEMFSEAIIYAKQATLN*
Ga0114363_100594014	F070098	N/A	MEIKDILSELITVATNILNEKGEPDNFDLEDFIATMEDYYQELDEIGELYFESDLEDGYDFDDDDNY*
Ga0114363_10059407	F024311	N/A	MNKYEALGSNYFGFEIFEEVFKAINERGYQHDDQMFKAGVASAEAAVRRLREEYYETISKSMMDM*