Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1005897 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6572
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6572

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10058971	F009398	N/A	IWEGSSIRCIPAAVTDANTPVAGGFQDNVASRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEGGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR*
Ga0114363_10058972	F005024	GAGG	MTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQAREAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSAIYNTAMQKAMDDELVELTNHMTEAILANGKVLEDNGIAIK*
Ga0114363_10058973	F006107	GGA	MNAVALRAEKAVADYLAAADWSGSGSGTPTCLTSYSRGLYDDPDLEDVMPNFPRLVVSTNSARPVQRVDLTNEVEVSIELQLSADDTDEAAVLTTVQVLDNRILPLFDDAGASALDAPTNDASGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI*
Ga0114363_10058974	F018171	N/A	MANTQGSKYIFGSPATLELYDAAGGLVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPANTTSVANAKLSAALPDVNGTCIISGAPVIEMGGYIDAINAVTGNRWIYAGGGSIKTTATGKATGTITLKRYTNITVTGAATAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1005897

Overview

Ecosystem & Geography

Associated Families

Sequences