Scaffold Ga0114363_1005227

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1005227
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10246
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002357	Metagenome / Metatranscriptome	567	Y
F011383	Metagenome / Metatranscriptome	291	Y
F013618	Metagenome	269	N
F020681	Metagenome / Metatranscriptome	222	Y
F028151	Metagenome	192	Y
F055549	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100522716	F028151	GGCGG	MNTWLEARDMGFVIMWAIVGLTFAAWIIYEIRDTAFQNGYWKGRADGWNMHRRMTNIKAQSDEVFDYDKN*
Ga0114363_100522718	F002357	AGGAG	MAFNLEDYEDVATLNKWFISNFPSGRSDISVISHDAEKGYILVQATLWRDSKDEQPCVSNIAFGSRDTYIQNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVETNPSFKEKLEARQNMYGKPGSKSAQIETILRDSFEADKKPEPVAWSVGDVVAEIGASIPNEPPACEHGHILKEGISKGGKPYRGYVCKAKQCDAKWAKLTANGKWYFEGIE*
Ga0114363_100522720	F055549	N/A	MTDYFMRAICCGAITATLLIGFRIQYIDTIMPNYEYECPGEESVIILQLPMDHKTPNCQVCGAAMRRVYTAVPFILKGTGWAGKDG*
Ga0114363_100522721	F020681	AGG	MVKFRCNFCSANSEFVWLDGYETHEGFRVYQCLKCCGVGVKNEAESTDTQEPVMRCTKCGAWMFADKECHTCAILMIKENMK*
Ga0114363_10052273	F011383	AGG	MDGEAYKTTNISGTFQLDMLADWGKANSVCEALWTAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVETFS*
Ga0114363_10052277	F013618	GAGG	MSVFTPEYKLTINGVEYTDVAIQDITHQAGRDDIYAQPLPSYLQILLVALNDENYNLQINDGIALQVKDSTNTFRTLFGGNITDITTEVATASSIAKTYSYTILALGSLAKLPKIITDGVLSEDQDGDQIYALLADLFLNSWNEVPAAETWSGYDATTTWANAENVGLGEIDQPGQYTMINRGSSPDTIYNIASLIANSAFGVLYEDSEGRIGYADQNHRQTYLANNGYTDISANTAIGAGLKTLARSADVRNDIYINYGNNFGSQETATDATSIATFGYKGETINTTLKNAVDAQAQADRYIALRSFPRALLDSITFPITNSEIDDTDRDALLQIFIGQPLRITDLPVQIAPTGQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALQWEQVSASEAWNTLSGTLTWENAIGAVA*