Scaffold Ga0114363_1004991

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1004991
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10378
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F011755	Metagenome	287	Y
F012447	Metagenome	280	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100499110	F028786	AGAAG	MQSFNYKQISLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNGKTKTK*
Ga0114363_100499112	F018353	AGG	MSKPKSKKQTIELPDVMASELIKVINKAHEDGKLIVGFVALLEVFDGKKKTVKIMANEDMPQHSVFGMINYAAEKYQFTLAPDEDDDDDFYDPYWYDGQ*
Ga0114363_100499113	F014609	N/A	MINELVGIIGLLLTVLVLVIKATSEISKMKSQLFPNGGSSLSDKVTRLQIEVSQISTSISSIESQLGKNKRKTR*
Ga0114363_100499118	F011755	GAG	MSVNMSEVIYLHYHYDYDNSKEWVCKNAKCYQKRLDDKKKLEEYQDQVDRDLQRKEDLMRIEDSLQDPRIDNYDSY*
Ga0114363_10049913	F008811	AGG	MATTILSGRQLSLSIGAKTYSEQILDSAINFDTERLTFDTLAGKAYKYIDSNVTLDLTFLNDAGATPNSLYGDLWTATETAPDTALAFVLTLKTGVTLTGTVLPNYPGVSASGADAQQVTVSLQVVGIPTEDLTA*
Ga0114363_10049914	F008616	AGG	MLKLRIQWELETGEKFDEWTRPIEIAQAEKEFYEGKSLLKVIRDQGTASNQLCLFLGHKIQQRITNKIEAFDTWTKKVLDIAATDLETPNFTKPEVSGE*
Ga0114363_10049915	F012447	GAG	MARTISLVPVDRDYKSLLRTFGKMDDIAKNDMKKIAQDLAERGAAYAQGSAARAPYNPKQAVAVAESIKVSKSDKAPSFSIGGRQKVGASAFSAGYVIMGSEFGSKQYKQFPRRSPSMGRGNKGWWLYPAMSRFQPTIAKEWLAGFEKVRNAWTGRI*
Ga0114363_10049917	F023328	AGG	MTVYTPTYRVTIAGTVQTSTILEDATITYGRNDFFEATQPSYCNLELLNLDGTSPVVELLDTIIIEVTDSTGAYVKLFTGEVSGVYNRFAGAGAAGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARIQRILEETLYIAWEDLSNTLTWNDIPVTETWANYGVQGIDTIDAGRYEVLARPAEIDQAYNLTDTTQQSGLGYLYDTTDFKIGYADAERRSENYAANLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVVAQNDTSINNYGLLEEVRSTILAQTADATEQATNFVNYRGTPKASLEEVTVNLANSNMTNTVRDNLLGVSMDSLLYLDNIPVGLIPEGSFEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNASIQWQNLANDYRWLDVI*