Scaffold Ga0114363_1004366

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1004366
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7423
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F008616	Metagenome / Metatranscriptome	330	Y
F012447	Metagenome	280	Y
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100436611	F012447	GAG	MAKAIQLVKVDKDYRGLLRAFSKMDDIAKKDMKQIASALAERGANYAKGAANNAPYNVKQARAVADSIKISKSDKAPSFSIGGNRKVGSSAFSAGYVIMGNEFGSKQYKQFPRRSGKGGKEGWWLYRAMSRFQPTIAQEWLKGYERIRDAWKAGL*
Ga0114363_100436612	F008616	AGG	MLKLKLLWELETGEKFDEWTRPIELSLAEKELYNGKSIVRILIEESTPSNTLLLFLAHKMQQRITKKVENFDIWKSKVTDITASDFETANFTKPEVSGEQQ*
Ga0114363_10043666	F028786	AGAAG	MQSFNHKQFSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKKTKTK*
Ga0114363_10043667	F001805	AGG	MKMATEKIYIQIDNDKIELTGADKEAFIADRKATADAQALLETEYKAKQKAREDAIKKLADVAGLTEAELNAIL*
Ga0114363_10043669	F023328	N/A	MTVYTPTYRVTIAGVVQTSVILSGGTITYGRNDFFEPTQPSYCNIELLNLDGASPVVELLDTVLIEVTDSTGAYVKLFTGEVSGVYNSFNGAGLGGEPNTLQIQAIGALGLLVKRTAGAVSYPEELDGARIQRILEETLFVAWEDLSNTLTWNDFTTETWANYGVQGIDTIDAGRYEVLARSPEIDQASNLTDLTQQSGLGYLYDTADFEIGYADAERRSANYATNLIELDADLVNADIQTRLQTADITNSVIIQYDDPIAEEAAENDTSINNYGLLQEIRSTILAQQLDAQEQAVNFVNYRGTPRTSLEAISVNLANGAMTDTVRNDLLGVTMDTLLYLDNIPIGLIPEGYFEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNDVIQWQNLDNTTTWLDVI*