Scaffold Ga0114363_1002886

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002886
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9409
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F004233	Metagenome	447	Y
F005585	Metagenome / Metatranscriptome	395	Y
F005878	Metagenome / Metatranscriptome	387	Y
F019642	Metagenome / Metatranscriptome	228	Y
F099166	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100288612	F005585	AGGGGG	MVTRDSIYYAFTKSREYSVFSSETQLTLHWCLSRQNSAGWWKVQSARIRISISLDIPQSYLGADLVHQKIGTTLSLTRNSNNHQWCDYCKSRWGQLKDGTWHLKAQVPAVWKVVSETPMRRGQVRFYCQPCAADAQNWPDGTFWSLKEQLTYAIDQFAGREKLDVELP*
Ga0114363_100288613	F000645	GGAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADSAAWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKPSRAPKKPIQTTKSELAEFVKAQRPNDPEPIVWDVSDVAEKLGAEILDEIPLCSGGDGPMVLKSGTKEGKEYRGWVCPTLKSGHPAKWMRIGSDGSWVFQK*
Ga0114363_100288614	F005878	GGA	LGISEVSLEIHPFKCGNCKKVTAHREIRRYASEINDGQEVWLMECQNCFEMRLIEPAERVASKEDEITRCDQCGNYKMKAAKCRICLIAAGQERIKERYWTGGATLERFLDADI*
Ga0114363_100288615	F099166	GGA	MTIKDLSLKLAAISLLADQAKKLKDELRAELKVQMDELGADRVKAELGDEVVAYITTTKPKFKWVIKSDRKALEWFKAYYPSEVIETIRPSSLEAILDKFNYQDDVVIDPNGEVVDWLEGSLGDPYLTTKFHGEGRAILRDALIGLKRNELDVKEILELEG*
Ga0114363_10028863	F004233	GGA	MTIWTPEWRIRANGNDVTGVTLTDLTITSGRQDINSPTPAGYCSLRLINTDNTVYSFAVNTSITIEVKDSGGDYVPIFGGRISDIRQIVSSTGEVATVTNLLITAVGALIRLQRATFTGNLAEGLDGAQITDLLDDLLLNSWNELPPAETWAAYSTTETWANASNIGLGTIDAGEYTMASRQIEDQVISVIANQIASSALGYFYEDANGLISYADASHRQDYLVANGYVDLDAGTALGAGIGIVQRQGDIANKIVIDYGNNFNSQYVALNAESQAIYGLYGEQFSSYLKNTADVEDMGDRLIQLRAYPRYTFQSITFPIQNPELDDTDRDALLNIFMGMPVRITNLPAQMLGGEFTGYVEGWTFRASVGGLSLTFNASPTEFSTIAQRWAQVSAAESWNSVLNTLEWQDAIGVIS*
Ga0114363_10028867	F019642	N/A	MQVSEFAATLASVLGSIGLLIAGLRYIIKLENIPLISRLDKLESTLELALKEKVAKGGTKARR*