Scaffold Ga0114363_1002572

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002572
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10908
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002357	Metagenome / Metatranscriptome	567	Y
F004762	Metagenome / Metatranscriptome	424	Y
F007571	Metagenome / Metatranscriptome	348	Y
F009461	Metagenome / Metatranscriptome	317	Y
F013618	Metagenome	269	N
F017290	Metagenome / Metatranscriptome	241	N
F055549	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10025721	F007571	N/A	AANIAAQNSIGSTGSSIYKAIADGIADSYGVMRFTPNRLLVAPSGGQNDIDFAGLLGAVDGSQRPLFAAAAPQNAGGLISQGSTAGTVAGLSLVVDPNYTGNDAGAKYGLVYPSAAMRFHESGTIELRANLVANGRIEIGLYGYVAVVNRFPTAFRYLTVA*
Ga0114363_100257210	F004762	GGA	MAKINEVLGMLIPEGGYVCIGEDYEGIKFLECEPITKAEFIAGFAQYDAWRAEQDNAKTAAKEAAQAKLAALGLTVEDLSALGL*
Ga0114363_100257214	F002044	GAG	MANTRKPIKRKKINRRVVRQTPEPLTKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWIVGDGGIIPSIDPTDNEDDD*
Ga0114363_100257217	F009461	GGAG	MRINGITILWFVIATGLLAYAFNLWQTEIYNRGYWCGRATGWDMHRRMTNIKKQSDEVFDYDKN*
Ga0114363_100257219	F002357	AGGAG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDPEKGYILVQATLWRDAADPSPAVSNIAFGSRETYMANMKKWYVEDTASSSLGRAIIILKGSNKTATKDSMETVKADQSFKEKLESRQNMYGKAGSKSAQIETILRDSFEADKPKDPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPKWAKLTANGKWYFEGGE*
Ga0114363_100257220	F055549	N/A	MTDYFMRAICFDVITATQSIEFRIMPNYDYECDGEGLSIVLDLPMEHEIPCCQVCGAKLRRVYTAVPAIFKGDGWAGKNG*
Ga0114363_10025724	F017290	AGGAG	MATTVITGRDVGLSFTGGTDIQAQATNAVLTKVNDRQVYQTMEGEAYKTVNVSGTFQLDMLADWGKANSVCEALWAAAESAPDTDISMTLTAASGAQFVFPVKPEFPTAGGSGVDAQTVSFTFTVSKGAVVESFS*
Ga0114363_10025728	F013618	AGG	MTVFTPDWKLTINAVEYTNVAISDIAHQAGREDIYSQPNPSYMQIELVALNNENYNLQVNDGITLQVKDSTDTYRTLFGGNITDITTEVATASSIAETFTYTILALGSLAKLPKVIYNGTLARDDDGDQIYELLSELFLNNWNEVPAAETWSGYDATTTWANAENIGLGEIDRPGVYELENRTADPDTTYNIASLIANSALGVLYEDNEGRISYADTTHRQNYLANNGYTEISANTAIGAGLKVLTRGADVRNEIFINYGNNYGSQKSAIDLTSIATFGYRGETLNTVLHDAADAQAVANRFISLRSYPRALFDSITFPLTNSAIDDADRDALLQIFVGQPMRITDLPVQIAPTQQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALAWDQVSALEAWNTLSAILTWENAIGAVA*