Scaffold Ga0114363_1002373

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002373
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10560
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10023736	F082694	N/A	MPGTKSARHIVEAVLASYLDSQTELNGVTFYTGDSAETNVLPKAVVLCDSARLPNDFPDGLGNYSCSVRITVFDSADDTTLADHRARCAAVAGAMQDLALIQAAFVAGGDALCYDVSPTAEDEGVNERSWASVFSYDVLVVVNPQ*
Ga0114363_10023738	F085382	N/A	MSIYSTFLADMKVILADVGVPATVGGNLFLVGLSRPMNTPKFDAGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATIVSGVPIAALGEGKKLTVNGQVLRIKGQAYKQASAVIELECIDDNQ*