Scaffold Ga0114363_1002245

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002245
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20129
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001713	Metagenome	648	Y
F002487	Metagenome / Metatranscriptome	554	Y
F007518	Metagenome	349	Y
F056570	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100224516	F007518	AGG	MTEWTKEEDEAFNDVEKQSNLGKQILRDLGQPYYFDIYVSPSQRNEVLEEVAKEFEKLKAFGDTAQSFAAFVRGMKT*
Ga0114363_100224517	F001713	AGGA	MQYKFDTTVGEGSVIVTVVMEYEQDEEGVYNENIQDVIYEKVSLMGIFSMEQYRDLEIEGSMRLQKHLLEEADHSASVDYDMRAI*
Ga0114363_100224528	F002487	AGTAGG	MITRQDAIKDLSHGTYCCYCTNPKTYGSCCGENHFVPFEDLYEEDKEAMIEEYLKEE*
Ga0114363_100224535	F056570	GGA	MKITTYQENARMLWEAHRVIHQQNMQRLAELNHQVQHQQKTHEIKTQWVKASQVDVMA*