Scaffold Ga0114363_1002229

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002229
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10985
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F077033	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100222916	F001725	N/A	MAAITNGTSCVYGIAGTVTNLFVQSYSLSASFNNEAMVISEAGLTVTHRLDDRKTEITIEGIAKTGTIPTLGATLTFTVNTSSAYPAGSASASFTGVITKVDDKGSNKGFTSVSVTAVDFEGIAYA*
Ga0114363_100222917	F001055	N/A	MGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCDSARAPGDLPEGEGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDATCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA*
Ga0114363_100222919	F001298	N/A	MSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVATVLESGGYMERTQYSVRLPAVTASWSQPDGSIGASAAIIASGAVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLVVIDDNQ*
Ga0114363_10022292	F003714	N/A	MPNAHHPYTDHLTFAGRVLPLKRPMAQYAARRLQAILPQIAALNSAGKTQADAAAALDTTVCTLRTWLDLTNTQWVNINRRGPYKRR*
Ga0114363_100222920	F077033	N/A	LPMSEIPGFEVANAVDADTGLGVQVLMGQEQSGYYNVTATLLFGAAVGRATSLHRLKTA*
Ga0114363_10022293	F014261	N/A	MKSLIALSFIIIFGWLAVVTFCGPELARAINGPEPVKAKVHRHHR*
Ga0114363_10022294	F003583	N/A	MAKPPARSASEANLLLAVLILTVVAGVTALSCAVTSSFVLDQLHNTEALALIVVDGSSIKSDSASLERNLSWATLALRSVRDLGWALAVGCLGVGVAVFIRSRRQNVS*