Basic Information | |
---|---|
Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1002229 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 10985 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (20.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 7 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001055 | Metagenome / Metatranscriptome | 791 | Y |
F001298 | Metagenome / Metatranscriptome | 727 | Y |
F001725 | Metagenome / Metatranscriptome | 645 | Y |
F003583 | Metagenome / Metatranscriptome | 478 | Y |
F003714 | Metagenome / Metatranscriptome | 472 | Y |
F014261 | Metagenome | 264 | Y |
F077033 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114363_100222916 | F001725 | N/A | MAAITNGTSCVYGIAGTVTNLFVQSYSLSASFNNEAMVISEAGLTVTHRLDDRKTEITIEGIAKTGTIPTLGATLTFTVNTSSAYPAGSASASFTGVITKVDDKGSNKGFTSVSVTAVDFEGIAYA* |
Ga0114363_100222917 | F001055 | N/A | MGTKSIRHIVEATLATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCDSARAPGDLPEGEGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDATCYDVTIGSEDEGIDERSWATAFSFDVLVVLPAA* |
Ga0114363_100222919 | F001298 | N/A | MSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVATVLESGGYMERTQYSVRLPAVTASWSQPDGSIGASAAIIASGAVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLVVIDDNQ* |
Ga0114363_10022292 | F003714 | N/A | MPNAHHPYTDHLTFAGRVLPLKRPMAQYAARRLQAILPQIAALNSAGKTQADAAAALDTTVCTLRTWLDLTNTQWVNINRRGPYKRR* |
Ga0114363_100222920 | F077033 | N/A | LPMSEIPGFEVANAVDADTGLGVQVLMGQEQSGYYNVTATLLFGAAVGRATSLHRLKTA* |
Ga0114363_10022293 | F014261 | N/A | MKSLIALSFIIIFGWLAVVTFCGPELARAINGPEPVKAKVHRHHR* |
Ga0114363_10022294 | F003583 | N/A | MAKPPARSASEANLLLAVLILTVVAGVTALSCAVTSSFVLDQLHNTEALALIVVDGSSIKSDSASLERNLSWATLALRSVRDLGWALAVGCLGVGVAVFIRSRRQNVS* |
⦗Top⦘ |