Scaffold Ga0114363_1002224

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002224
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10999
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (47.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011740	Metagenome	287	N
F012434	Metagenome	280	Y
F017799	Metagenome	238	N
F048176	Metagenome / Metatranscriptome	148	N
F082107	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100222411	F048176	GGAG	MNNDNEIKAQAIINAATEQFRSLLETNFRSIAKAAQDGFIEDEEATEPKAKASFTVEWDSLAQAPKVGVKIAWSVRFKDESETEIDPLQSKLGLEEMK*
Ga0114363_100222420	F017799	N/A	MTTQQTHDQDQRELEALRFSARAARAITTLEMQRKTITREYGERIKKIRALILILQQRESIGQLGIDGINAIEISPELRKLIHNPVGDLT*
Ga0114363_100222421	F011740	N/A	VITATYDRAANFEASYDGARSDAGRLSAEIMERLVEMHELKLTSAADLCRRLGTLADLSPTMFLVTLRLGSGDVSAVRQSFGEMAAKTGRTRQALHYEWAHEIERVRLVFPALAQLMTDYRQATDEAERPDREAAP*
Ga0114363_10022246	F012434	GGAGG	MSTTEALTHALILAITAPDQARADRAIALAESIGAGCTAKQIVTAKRNAAKLSK*
Ga0114363_10022248	F082107	AGG	MTTEQHTEILTELRAIRAALEAKPRPAQATTTASTGTPNSLPPPAVEILNAGEVQIHFGKNTGTPLSSLTDKQLLWYGADRPEQLKQDGTPFAPREADVLLKNACRTLWHQRKSGAPIVLAAQPLDDGEQVPF*