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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008266 Open in IMG/M |
| Scaffold ID | Ga0114363_1002187 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21222 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (84.85%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000888 | Metagenome / Metatranscriptome | 847 | Y |
| F036236 | Metagenome / Metatranscriptome | 170 | N |
| F043366 | Metagenome | 156 | Y |
| F048969 | Metagenome | 147 | Y |
| F067742 | Metagenome / Metatranscriptome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114363_100218712 | F000888 | AGGAG | MSQYFAQLDENNVVTHVAVVTAEFMAENPDRYQGRWVETFFDTEGKTYAGVGFTYDEDTEDFTAPVTPEPPADPE* |
| Ga0114363_100218730 | F048969 | GGA | MKSTVVTVGTTPTIVVNPDDQNRYIYVQIVTSATIYIGDSTVTTSNGLPLEKHTSPHEFFLPLKQTMYAVVTSQVGTADLRVMTPDVD* |
| Ga0114363_10021874 | F043366 | AGG | MGYSIVLIRWADAHMSDSGWIELDEYEDDGETLVETVGFLIPVGEAGSKKDHVTLWQTLCEDEGIHAMHIPIGMVREVKVLSENGLEGLRHLR* |
| Ga0114363_10021878 | F067742 | AGAAGG | MSKRPYTGNKDGAAASEHPQNTAVWKELTKAYPAIWFNGGFGVRNMRGKESLSVHATGRACDISWRNMGDGKRGKPKGGRKQAMAAMDYLVKNADALGIEMVIDYFPQKFGRAYRCDRDAWKNYDKPEVHGAPNGDWFHYEVDGKKSAPQIKEFFAQNPPPAVTEA* |
| Ga0114363_10021879 | F036236 | AGG | MKKMQDVLGRILALFLTNALGVVTGAAVIAPELEIWKSALLAGAVSVFKVVESLARASVDGTLTRDEIDAAFGASPAKIAKKKAAR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |