Scaffold Ga0114363_1002123

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002123
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13104
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (41.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003661	Metagenome / Metatranscriptome	474	Y
F011666	Metagenome	288	Y
F032652	Metagenome	179	N
F056612	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100212315	F056612	N/A	MSDFESAFDAKFTLFDVKEKKSDRAPDKTGSLEIELSEAMKLAEYLTAHPGEDGYGGKTVIKIPVSAWNQRSQSGTDYISGKLWAKKPERSGPPPF*
Ga0114363_100212320	F011666	AGGCGG	MQPNTPMEWHPIERTQESHFSEVATAKMLEEWLHNGDIKGIYNAALLLNTMLHQQRTMTKWLAGEAARNLGRPELENEILQQAISQPE*
Ga0114363_100212325	F003661	AGTAG	MDPTTAAALAILVAAGSEIIAILPIKENSWVQLIVKVLKLVFPKR*
Ga0114363_10021239	F032652	AGGAG	MAIVELSSALVDQCKLCAQQRDHNRRNSVDYSSDRTDDKSIWSFMGVLGEVALLIYFELEIDWEYLSTDKGFCGVDVGDIWEVRAMSKFGNRLFLWSDEVTKPNKLSYAWSKVVVDPITGYCNVCGWAMGYEIAINGVHNQYDCKRSSYFLDNNLLRRHCNPNWDQFFAAKYYNLFNQINETNF*