Scaffold Ga0114363_1001849

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1001849
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12219
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (40.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003601	Metagenome / Metatranscriptome	477	Y
F030408	Metagenome	185	Y
F067537	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100184914	F001807	GGA	MSVLAIEDTTIDGTYVTVTAVVDEMRLLYKATHLDPEEWVPALCTAYFQLDKEEQVPTDEDGFCSYLDSLDLNWQLVDISDWNLD*
Ga0114363_100184917	F001165	N/A	MSLLNDAPKPRIPDAIDAQRLQAMQLVAKMKESADKYGVGFVGGFISPDGQKFMMTNMNEDDTNKLLPEDLK*
Ga0114363_100184924	F030408	GGAG	MRIALVADRTGRYAHVWGSPYSWNQFVNQLEDIGCEVIEEQTEDWDGYTNEEIQADCLSVHQLIHDSDFVPHN*
Ga0114363_10018494	F067537	N/A	MTKRLFEYSIGDRIAERPKIHGVFATSLESIERIKQYRNQRYGEVVGVNYKLDSRGNRQKYLLIKWDHLNSATVHYAARICPVSELERLSKETLVPGE*
Ga0114363_10018499	F003601	AGG	MTDYTDDQLLAMAMANIGDYIHDNSPQYILIEEDPRNEDDYDTWAYGTEPLPHDHTWHSTSIDVEVSPGMPE*