Scaffold Ga0114363_1001827

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1001827
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12340
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F083690	Metagenome / Metatranscriptome	112	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100182717	F075869	N/A	MKNWLLIGLAGIAGWYFLGKTQLANRTKLIFKKLSFANKKFQLVFGVQNPTGQTATISAITGEVYLGDKLIADFSSFGEQKIAAKSESELKIQASPTIGILQLITSKNWLKKGLAYTIKGTGNFDGIVVPFDYKANLI*
Ga0114363_100182720	F085397	N/A	MQQRNKDLPAMPVHPMQDKFGQVILMAGMSKQEMTALNILSAQLRKNKIEDLSPDDITYLIKESYNIADEFCAYIENKGEKESGSIII*
Ga0114363_10018277	F060719	N/A	MTPKHLKVSIKDEISADRLKLAYNKQASDRARYEAENGISKSTGQAFQKYYVETKVFYTTANIGSECNEITFINGGTTNLVIADVPLGPNQSLRITGNRGEIDTTQYSLAFATPINTGNLLIVIRKLYI*
Ga0114363_10018279	F083690	N/A	MPEISADKIIGKTLFAKKDLVRLNSNLVKIGTIVKGSPVGQVYSYIQRGGNVYWQFIDFNNKPYLILHTADSFKFTGDVKDAVQEQKKQSEKIEKQEKGSIPFYIEKYGKWVLIYGIGAYLVATYIKSRK*