Scaffold Ga0114363_1001328

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1001328
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14733
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F011755	Metagenome	287	Y
F013987	Metagenome	266	Y
F014609	Metagenome	261	Y
F023328	Metagenome	210	N
F030061	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10013281	F013987	N/A	LIVLLKPENQRILPALDRAHEEALRLGVITSLDGAGVAMMFTLAGVLDSGTLKPADEVKYMNQLMNLLDKYGLSLYGRKEKPDVEVGDDPLERIRQYSTENSDHTDSSKPN*
Ga0114363_100132811	F023328	N/A	MTIYTPEYKVTIAGVEQTSSILNDGTITFGRNDFFEPTQPSYCNIELLNLDGTSPDINLLDIVVIEVKDSSGSWVKLFTGEVSGVYNSIAAAGVNAQPNVMQIQAVGALATLVKRSAGAVAYPQELDGERIERILQETLFTAWEDLSNTFTWNDLGTETWDTYGVQGLTTIDAGRYEVLARDAELAVASDLTDLTSNSGLGYLYETTAGEIGYADAERRTDNYSTNIISIDADLLNAELQTRLQTADISNSVVVRYGDPVAEHVAQNDASIDSYGLLELIRDTILAESADAQEQAENFVNYRGTPRASMESISLNLANSNMSDSVRDDLLAVSMDSLIALTNLPVGLFPSGTFEGFTEGWTWTLGRKNLELTMSVSNSVYSTLDTQWEDYNPTTQWQNLANDYTWLDVA*
Ga0114363_100132817	F014609	GAG	LINELVAIIGLLLTVLVLVIKATAEVIKMKSQLFPNGGKSLNDKVTHLQIEVSKIHATISSIEDKLGKPKRKTR*
Ga0114363_100132823	F011755	N/A	MNNDKQMDNVLYIHEHYDWDNNKYFTCRDAKCYQKLLEQKKALEAYQFQVDVDLARKENLQAIEDMIQDPRIDYY*
Ga0114363_10013286	F030061	AGTAGG	VALSTLRSGLKTALTDNTKYSCYDHVPEVIIPPAVLILAGDPYLEPVVIGNNKNWRVRLTLEVVGATYSNPSALTNLEDDIEAVCALLPTNWSVLSVSSPRIRATNSTDLLSSEIQITTVYTG*
Ga0114363_10013287	F008811	AGG	MATTVLSGRQLTLTIATKNYSEQILSSAINFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAGKSPDSLYKALWDATESAPDTTLAFVLTLTTGVSLTGTVLPQYPPVSASGADAQTCSVSLQVVGIPTEDLTA*
Ga0114363_10013288	F008616	AGG	MLKLKLAWELETGEKFEDWTRPVELSLAEKELYHGKSIIKILTEEEMPSNTLLLFLAHKIQQRVTTKVENFEAWKKQVVTIAAVDFETANFTKPVQSGV*