Scaffold Ga0114363_1001175

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1001175
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31176
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (85.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007518	Metagenome	349	Y
F017789	Metagenome	238	Y
F104706	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100117520	F007518	GGAG	MTDWTKEEDEAFNMVEKQSNLGKQILRDMDGQPYYFDIYVSPSQRNVVLEEVALEFDKMPFGDTSQSFAQFVRNMKGKL*
Ga0114363_100117541	F017789	N/A	MAITDLADLDLNGSIPDDWKFTVKNGSTLYDEVGSAWRERSENTVYLSHKNDSDSKQRWFHPDTMVDVYKVSL*
Ga0114363_100117544	F104706	N/A	MGRPSKPDTRYFQRTLSAPERMILLSAGNGNLCRGFENVLDLYHYAHNQGFRPDMDMSILKIDRGITNSPNEDCL*