Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1000812 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19218
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (63.16%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19218

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (63.16%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F046685	Metagenome	151	Y
F064414	Metagenome	128	Y
F075727	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100081222	F046685	N/A	MNNQIAEYETADYQQPQYQSVPVSRDEVYATQFQEDKIKNIIAQLDPENQLKEIELRIRGYKKDIVTGAWEKIDQEAKEVPKLLVERFISYLSSFMNQNTTQSNLSESQVNNIMALVITYVTDELDSNAQIYELENNYTERTRIGHIVVANTFFVLCRALNGQEAKRMWKALSLNETLNPETKNKFTEALKFWK*
Ga0114363_100081225	F064414	GGAGG	MADLGGMFAKIGLGGGSSGGMIGSMATMVVGVVALLGCIGGIWFFINKRKNWNLKVEVKIPRNVRQYVEKDGTVKISGTLNKEWAKGYYNAKQGVCYIKRKGKKPVAMKPFDIKRFLSTGNILTVLQIGIEDYRPILDDSYIEVIDDATGEEGALIKAKIDTSESKSWRNSFERENKQAFSIKNWLSEHGALMAMGLVLLMNLIGFSIIIARMPK*
Ga0114363_100081233	F075727	N/A	MKQMNKRGWVARDFIIAMLIFSATIALMVIMVGSMANDYDNPNIIDEEFSAQFDKFNEDTATASEMWNATTSEGGLSLVGTADLLFFSTFRVISLIFSSVVSAGSQLADFGTFFGIPTQITAIFMVLIFSALTVYIVFIVISSIRSGREL*
Ga0114363_100081236	F007072	AGGAGG	MRSILDQKKGQLSLGDAPTVVLLVGLVFLVMATISFIGEKYGNALTDGSTAQNVTNDLNTEIGNNTSIAGIVLTISLVGIVLTVLIGVFIGVRGAGSRV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1000812

Overview

Ecosystem & Geography

Associated Families

Sequences