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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008266 Open in IMG/M |
| Scaffold ID | Ga0114363_1000613 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22410 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (66.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F054870 | Metagenome / Metatranscriptome | 139 | N |
| F063689 | Metagenome | 129 | Y |
| F066774 | Metagenome / Metatranscriptome | 126 | Y |
| F073551 | Metagenome | 120 | Y |
| F104778 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114363_100061314 | F063689 | N/A | MSATMEVLFRYLVFDDMGEPIMRFRTKHEAECYILHRPNHKIERLPPQPKENPFDLIKEEPPF* |
| Ga0114363_100061316 | F104778 | AGGA | METKAYLIEEYNLQGELVWKMISFFEPDSLEWMRDLKGKKHNLVISELGVKNSKTIKGIEKKYDSSKFVIGH* |
| Ga0114363_100061317 | F066774 | GAG | MTQDNTMASLELWVKQLQGTLDVQEIARTKPAPIPDIAIPYLVFLRPYDKVGLLASTNKRRFTKCNIEFLFDGNTRKLKDVKMINQDDDDGN* |
| Ga0114363_100061321 | F054870 | AGGA | MKLLTALLIALPIASFAGESPKLRYNWVEKKWNYAPKEAKLKYNWTADQYEFVMPGSQLKLNTQSNNYEYVQTQISNPYQSEIGE* |
| Ga0114363_100061333 | F073551 | N/A | MQNKPETIDDIFNFLQNKTIKDIDADYYDNKNYLVILLSDGSICYISSSDSLFMAIDRHLIN* |
| Ga0114363_100061337 | F001991 | GAGG | MAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNNGGSPVNLTGATIDASIIRRQLSNIRDSRYGLTFDIADYTPPPTPVSLTISNRVDAAGTFTLEIDESTWSVISTDPQLDINAQNCVGFSGRIKISFPSSGSTPAQDMIIFLLFLVRSDGVVN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |