Scaffold Ga0114363

Basic Information
Taxon OID	3300008266 Open in IMG/M
Scaffold ID	Ga0114363_1000570 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47639
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (58.46%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

47639

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (58.46%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.9
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.9

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F025263	Metagenome / Metatranscriptome	202	Y
F034542	Metagenome	174	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100057019	F034542	GGA	MARRRGSDSFNFNSFKTNAGLNKVPTIKGSDNQGELLRPLPFERRFRPAIGTKDFSVVSDYDYASLWCRWRRGYEMSMYAQEAYGGLTYSFKYFVSGTPGVGVFLPGLCFMYPTTRVDMKMWMVGVRPRDSFRFIDFDYAIQSVTTYNETTYAVRLSSNFGAPISFFTGEVVSNRFNSDGTDKKFGFNNYTVTAVGINGVPARPSYAPIFNTLFLSFSADNSWSVVDENKMTIPASGPPAVGEYLTTEMRAQCTCPDFLGREGFDLYQASIKRKYPYTGVLNTAPGFYDAGVDQTNRISNSLDNPGFARTFGFIYTNQIYNIPRYTQPVYSDPNFFYYQPKWCKHIYAAMWDLQRKYGQENMTAPWLPQPTDEPMNEYYREKFDRDLKKQSDFLRREKDLRWWQRYSPTKDDMPTHMTYPDMYNMMSKTLNYGDLTGPSTINKGYFEMFTVDEFDPFAPINFDDLITYDGGTYENGVLVEQPTNILDGGEYANGVLIPPVGFPSLINGGTY*
Ga0114363_100057026	F025263	AGGAGG	MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTGQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSSANVIIPSPDFHKDIRSDITDGIKVPAGAYVYRASLRVDGGDVISSGVGGGSATPQLTLVPAMNQGLRSDGTVVSGQFGVSVTGSSSRIENGSNASVNIINSNNLSALAAETTWRLFATRNLGGVVASGLTLASGTFDPRAGVGSLKGKDKALAVCEVCWIVPDSAPKRDDLALQPGGVVESSVFTSTVPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114363_1000570

Overview

Ecosystem & Geography

Associated Families

Sequences