Scaffold Ga0114363_1000425

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1000425
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44018
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (53.45%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004722	Metagenome	426	Y
F006785	Metagenome / Metatranscriptome	364	Y
F009141	Metagenome / Metatranscriptome	322	Y
F014614	Metagenome / Metatranscriptome	261	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y
F095168	Metagenome	105	Y
F100725	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100042511	F004722	N/A	MSRPKTGRELVLEWLNREIRAARTADLQRAAAFLEWARDVRKGCAKQRGGARVAQANAWRKRVDEDVRW*
Ga0114363_100042513	F017122	N/A	MEVTPFQEQQDPELRLGEGRSRTSAEKSELFELKIWLPGQGAMRDLVRAQSLQQAIEFAQNRYPKCKVEVPATAAKKPKLARAKNGPRETARRRLKLVEKKGESTNR*
Ga0114363_100042514	F043896	GGAG	VSQPIADWARQSWGEVIVDQNRADLLDKLYFWDGRDKKDHPFHSTYTGLYRKYTAN*
Ga0114363_10004252	F014614	N/A	MTDWYADYYRQSRGYNDNDLRELRSVPRKPSTEVPEVFKHRFADPAEYDAWVEERRRAYFG*
Ga0114363_100042524	F100725	GGA	MSHRTESFVYSAEQVPIGGQPGDVLLKVQNANYYTAWRDFTYVFETYDVVLDDGEY*
Ga0114363_10004253	F009141	N/A	MVPFYRSYLLGGKTVYLDKLSELSDSELNMLNIETMASLEEARRDYDAVENKQSEEGGSVYRRLKVAGYFQAAIKLELQN*
Ga0114363_100042537	F095168	GAGG	MARDFKHLLNDLKEVVTSSARYAAVEIMNSLAEQGPAYSGQFSSAWYAVEPGQTPGGPRSAGNNIYKYDLRNVPKTKFRTGTYYEIVNGADYAPQALDLEEGRFQTQYDDAGNILEPLKTPVAVGTRTGPKRGQVSNGEGFAVSTAPLDWYVTYTNGGAMQRDLGNGVRIGFRQGPRGGTPSGTGFS*
Ga0114363_100042553	F006785	N/A	MFTSQRDRKDAREAEREQLRLEKRHLRDLRWAVERSSIEATDWADLLALQAAHGKEGPLQLWRELVPYWRDCQRLNGGADIPAELFPQATGLFPRTPEPPKAPATRAKAAPGAPRKTRSDAGKAQPSRKVPA*