Scaffold Ga0114363_1000382

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1000382
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28905
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (25.00%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001923	Metagenome / Metatranscriptome	617	Y
F002038	Metagenome / Metatranscriptome	600	Y
F014261	Metagenome	264	Y
F015597	Metagenome	253	Y
F042341	Metagenome / Metatranscriptome	158	N
F042864	Metagenome	157	Y
F053888	Metagenome	140	Y
F058813	Metagenome	134	N
F065732	Metagenome / Metatranscriptome	127	Y
F088512	Metagenome	109	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100038210	F088512	GGA	MPGTTSPRHIVEAVIDSFLTAESGLAGVAVYTGDSAEINVLPKCVVLCDSARTPGELPEGAGNYFCSVRITLFSNADDTTLSDHRARCAAIAGAMSDVAGIKAAFVADGTALCYDAIPESEDEGRDERSWATVLSYTVPIVVNPTP*
Ga0114363_100038221	F042341	N/A	MSKPRPKSDPPAVKYAEPHFTFRILGKAKPSHNPNCKTPFGYCWKGYGDIHIDPRQPEHELIDTVVHELIHDTYPFLDEDAVEAGATRIAESLWRMGYRRTIINP*
Ga0114363_100038222	F001923	N/A	MSASPIDPETIPKELKDGVVASVLGGLAMTARLLLSTEPVSFGWVVRRVLAAAITAALVGYGIQEHISSPGLRMAVVGAAGYAAPECLDYLMRYIKARGEKEVAAVTAKVKTNGKGKTSKAAGKRKR*
Ga0114363_100038224	F014261	N/A	MKALASLFAIGLICWLAVVTFCGPELYRIINGPEPVKAKAVRHHRAK*
Ga0114363_100038226	F042864	N/A	MTTKSAKAELVPDKAMQELLKRKVIAFREAASVKDKDGYVRGIGSYALYGISHSRGQLVVLASEPTAGDFNQYVTAKAKASAVALYDHVVEYRDAGSHTRPKVTILCWHKAE*
Ga0114363_100038227	F053888	N/A	MNQEPTDIVTIGDRPIRLTRPVLPHAARRLAGVLPQLNALNAAGKSQSDAAAALGVSVGSIRTWIGLAGISWSNLNRRGPYNRQK*
Ga0114363_100038230	F000957	AGGAGG	MSGSFQHLDGMAALLSELYEINERIMCGDIVSAKAAIASTRMTKLLRHYHEALSEDGATSISLDVFIAAGGWVGITYSYQLSDGFVISGSQTPRRV*
Ga0114363_100038236	F015597	N/A	MSKPDDFDPFDPIKAAMGSMHNANLLAAKDARIRQLEERLEGMREAGDQLWYCIRHAQRIDAEERNEAVQEWQEARNHG*
Ga0114363_100038238	F002038	N/A	MSDTPKGIERIAATVRGQYALLLLLDGYPYVELTARKHADFLTDLNAWKRKTYPSLARSVVRFFTLAPSGEVKELTFTK*
Ga0114363_100038239	F098917	N/A	MTNREYLRNLLTQLAGELATLRPTSFEGIAGDANALAESIIAANNELDALDAEKIEEAYHVKPIYDRIKAVVAHERVLRNQLDRIALAADNAIDLCNLISAHVEEHTPGEDDAAL*
Ga0114363_100038242	F058813	N/A	MSAPTLVLISGFARAGKDTLAEGILEWSRRPSRKTSFAAHLKDAANDFLWSLNIEADFHNEAFKVKHRDVLVTLGKFARSLNPDIFAENLAHYVPIQMTPDEVAPETVVCSDWRYINELRVCQSILWDLGWKVRTVYVSTAGVGPANDEELDSICEIKQFHSFDQEFVFAPNSRQCILAEGRHLAKTWNL*
Ga0114363_100038243	F065732	AGG	MSADERIAWAKRAGLTEERIAFLLACPKFTRTGRNDKPAFIKTENPNHHLQKLGACWWLRIRRRKTDILHNLGKDLETARRHRDEMLAAYDAGLPIPHLQSK*