Scaffold Ga0114363_1000361

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1000361
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29892
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011488	Metagenome / Metatranscriptome	290	Y
F012346	Metagenome	281	Y
F018910	Metagenome / Metatranscriptome	232	Y
F044502	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100036122	F012346	N/A	MIFGFYYKNDKKEEIISRTISSSRLNAAKYFAARKQLELKPFLKVFGVKTII*
Ga0114363_100036128	F018910	N/A	MKNLITEEFKEKFKAAFARFMNITIVSSTLIAGFGLGYYFQELKMKPKAVNETILNKEVRIAIDSEDKLIMMDRKTGGYTIYSDSIGRIIFKMYATKIASPVVIK*
Ga0114363_100036137	F044502	N/A	MKKGFGFVGSLSYISNMMKEQDENQFNGLSRGQVKQIIRRNMVTRVKASKKVYDRKKERKNLEF*
Ga0114363_100036141	F011488	AGGA	MTNEELIEELYHKAHKKGFFNELHEKVSELKQTKQIKCGYEIVRVAYDELKKIKLAQPFPHL*