Scaffold Ga0114363_1000108

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1000108
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48430
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (43.06%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002985	Metagenome / Metatranscriptome	515	Y
F004130	Metagenome / Metatranscriptome	451	Y
F004278	Metagenome	445	Y
F022857	Metagenome	212	Y
F073110	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100010813	F002333	N/A	MSNQTVQDLSQAQACIYTRTNLRRAFQDFDDTDISGIYLRDDLCLVARRDGSEQTYNRQIIVSAFQQYTHRLKDFFSYLGPNYRGPSIWHNGAYIMFKGWHHSHALGHTTGSAQLQTHWADKFIHLSDRAKLIALLQSDQTDLGHLVAPDGLRLPNRGVDLESDLEEETSSVSAINVEPYCSCGSFQRQLLNVSGFQQEIQGFKPWCIHLTWFHKYRELLCKRTEARNASPGGTPDKCVAWWYAPPSDATSDGRFVLLHTKSGAQAPLTHWRTYKPKQTFNQQDAWDLFFSMLEAGYVPFPGIALPQLQAAVKKS*
Ga0114363_100010815	F001018	N/A	MTQITQTKLKELNVLQLYEHYGALERSLPLLTPESQDMARAELETCAKLRSEKIDRIHYAMASHEDAVERVKQEIELLSQARRHHEAQLRGLKGLLSWLRRALPKDENKITGCKYQFVLVKKKDLTVEISSDVEQWQADERMQFCIEQEVTTTKQTVLRSMDGTIFETKIEPKTKTEIIPNLDAIRNAYQTGQPIPHGVKVTQDYSIRTKRIVGEPGVDEGLVAVETPEHLGEVLREAGTSD*
Ga0114363_100010818	F022857	AGG	MDPIVVPKVTVSFAVDVEVEYDPFVGKTPTEMAVALQDEIDELLFEASSGVVGVFTSITSIAQ*
Ga0114363_100010838	F004278	GAG	MIRILFKDIVAAIAEWWKKLWFESRLKARLKMIELENQIESEIEREKAARPMYTEHPIDPALQTGESQKLGGAMQLTAPWYKNDCMDAR*
Ga0114363_10001085	F002985	N/A	MSYVIATWKDDRPYAITACPDPKQFQLIPLDSEVALNKIFSHPYRAGAQNILSWINKNDKQLAREELSIQDEARFRK*
Ga0114363_100010855	F000973	GAG	MSSIGIRKGLEDIAHELKGVRNILASMWHSRYQTEETDRLNPQAFTDEYISTEECSRRLAVSDQTIRNWIAVGKKQPEKGWTEGLHYVNIAPDPGKKAVIRIPWNYLVMSFSKNKEISLSDFYGNKYKSTQEKLE*
Ga0114363_100010862	F004130	N/A	MHNAASFLDAFVQDEVKSRCLTEEDFGQPLANEENDVPLYDMYNRGLAACQEGNERQNLSLAEGQRPGLTGYIPSAEEGSMMGASPKPKTLVMELEAVPEGERDLSAKRRGLRR*
Ga0114363_100010870	F073110	AGGA	MSVEFGDVVETRYVTSEEQLSRSQFGFSPVFFSGSPIVYTPGDVVHLPYTSGELSTMEAVGLAWGAFSSGVGPE*