Scaffold Ga0114363_1000039

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1000039
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73670
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (23.01%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049500	Metagenome / Metatranscriptome	146	Y
F056375	Metagenome	137	Y
F085178	Metagenome	111	Y
F091906	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_1000039111	F049500	N/A	MIFGQINPVLSIATQDTLFNPAPEFITGSYMTAVANQYPLGANQVNFRVSYGNCVFESGSVVKFNVVHSDNVVLSGSTITTWGEDDSVILDALADEQGTTVVAIVSGSANGMGF*
Ga0114363_100003913	F085178	N/A	MSKRKIPTALFEPLENIRTVDLVETSALLDLIKKETPLAIKEAFESRKTFATLFEINGLGFYLDIPKQYWIPALEQCINFMLEEEKFEECIPLKKLIDEIRQPVKTLPNKTTKKKENGAAS*
Ga0114363_100003972	F091906	N/A	MQTTAESFYEAIKHVGAGSLYYLVRKKGSNTEFVFEPLMIDARNRDLTIKILQRAMNEPNFIAFPGTPEAYNFMRETVANSEEK*
Ga0114363_100003978	F056375	N/A	MQNKKSTKNSKKKEFIEKAEQAPPPYTEGHWEESMLENDSYYDIDIINKANRPVFRNIEKWEKKYAEASSWLGKWYCQIQIDKYRAKLQHYK*