Scaffold Ga0114361_1033045

Overview

Basic Information

• Taxon OID: 3300008265
• Scaffold ID: Ga0114361_1033045
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1736
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F001998	Metagenome / Metatranscriptome	606	Y
F019954	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114361_10330451	F001998	N/A	MMSVWNCSHYTIVETVEPFKLHPTSMSYIYKVIEHLEELLMGVWQHIHTVTTTDVFPDLGKYSEII*
Ga0114361_10330452	F000211	N/A	MSYIYKVFEHLKQLRMGIWQHTHTVATTDVSPDLGKFTEIIYDVNVETIHLRYP*
Ga0114361_10330453	F001998	N/A	MWKLSTYAILETVEPFKLHPTYMSYIYKVFEHHKELWMGIWRHIHTVTTTEVSPDLGELVEIIDDVIVKTIPLHYR*
Ga0114361_10330454	F000211	N/A	MSYIYKVFEHLKQLWMGIWQHTHIVTTTEVSPDLGEFTEILDDVSVELIPLHYR*
Ga0114361_10330455	F019954	N/A	MSCIYKVFEHLKQLWMGIWQHIHTVTTTDISPDLGKFTEII