Scaffold Ga0114349_1049807

Overview

Basic Information

• Taxon OID: 3300008263
• Scaffold ID: Ga0114349_1049807
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2022
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F037067	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114349_10498071	F000211	N/A	MSYIYKVLGHLTQLCMGIWQHTHTVTTTEVSPDLGEFTEILNDVSVELIPLRYH*
Ga0114349_10498072	F000211	N/A	MSYIYKVLGHLTQLWMGIWQHTHTVTTTEVSPDLGEFTEILNDVSVELIPLRYH*
Ga0114349_10498073	F037067	N/A	MSYIYKVFECLTQLWMGIWQHTYTVATTDVSPDLGEFTEILDDVSVELIPLHYLRGCRTFQTASNIYVIHI*
Ga0114349_10498074	F000211	N/A	MSYIYKVLGHLTQLWIGIWHHTHTVTTTEVSPDLGEFTEILNDVSVELIPLCYY*
Ga0114349_10498075	F000211	N/A	MLYIYKVFEHLTQLSMGIWQHIYTVATTDVSPDLGEFTEILDDVSVELIPPHYH*
Ga0114349_10498076	F000211	N/A	MLYIYKVFKRLKQLWMGIWQHTHTITTTEVSPDLGEFTEIIDDVSVELIPLRYH*
Ga0114349_10498077	F037067	N/A	MGIWQHTYTVATTDVSPDLGEFTEILDVVSKELIPPHYLRGCKAFQTASHIHVIHIRC*