Scaffold Ga0114349_1025468

Overview

Basic Information

• Taxon OID: 3300008263
• Scaffold ID: Ga0114349_1025468
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5187
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001019	Metagenome / Metatranscriptome	804	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007470	Metagenome / Metatranscriptome	350	Y
F007644	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114349_102546810	F007644	GGAGG	LTKSSRFLEYMKLHLISLNQDMESHDNPEIKIHLDGQIVATRHLLSVATDIMNNSNERYNND*
Ga0114349_102546815	F001019	AGGAGG	MSNYGPSLEILEVAYDVSPGGIRTFEVYDKGDNYDIMDIPIYETESLTEAVQYCYNLDKDFIVRTYAEWEMREMLDNL*
Ga0114349_102546818	F003603	AGGCGG	MKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTIDRIVEVVAWIIEKQAERYRREVANDGTVCEGLIIANHLDKVIDKIKITNELKSVQLPITPKERGEFVKSLPEVKEQNYRYSW
Ga0114349_10254683	F007470	GGAG	MDYQDGFEDGVKFAREVIVTNIRLWAETSEDGNIRLWAETSEDGPAYDDIADRLEFGTVDYDL*