Scaffold Ga0114349_1007642

Overview

Basic Information

• Taxon OID: 3300008263
• Scaffold ID: Ga0114349_1007642
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5397
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024000	Metagenome / Metatranscriptome	208	Y
F069712	Metagenome / Metatranscriptome	123	Y
F079623	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114349_10076421	F069712	AGGA	VQKIVGSIVNYARAVDMTVLMALSMNASQQTKGTERTMEKALHVLNYLATHPNATIRFRATDMVMNIHSDASYLSEPKSRSRACGHFFLGEPKSHSRACGHFFLGWLPVDGQHIHLNGAFHTLCSILRFVVASAAEAELGALFFNCQEGMIFRLTFEDLGHPQPKIPVHCDNTTTVWIA
Ga0114349_10076428	F024000	GGA	MTKLTKAVPTATALVRKVARIPKEETEPQTSRRLSLWEATEAELKKAQALESIKVGLVYDLFHKTLKEDPELQWDRIVNDMHAKDPWEDLRGAKHDGLRRKSVASLWECIDFHKLTVYSVDAVERQKFYMLCNLKKPAKSIIWSHVTRMETLNKYLGLLPMIKNSPQAVASTELGNVPFNKTTLASIKLSHLPVAWRTQYALTHTLVPESPRAILVDLENIEKLFAEKANEAARANKAKVAAATKAGEQVPRKRKRTHGGGPNKGTPKKGRTDKYCKWCKAVDGPFTTDNTTECCRFNKDGSQKDRLTEDNGSSST*
Ga0114349_10076429	F079623	GAGG	MGPVARSTSGPVDKRLKLEQPLGIYLESTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDNTCNSRDANPGKLLNKPNKRLNSKKKHLN*