Scaffold Ga0114349_1000081

Overview

Basic Information

• Taxon OID: 3300008263
• Scaffold ID: Ga0114349_1000081
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61008
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (50.53%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Cyanobium → unclassified Cyanobium → Cyanobium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081286	Metagenome	114	Y
F088247	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114349_10000815	F088247	GAGG	VPLEQPAKPGAPPRTELSERLIVENQGLAEAAAAKWSRRCSRPFEDFIGPALEGLINGCRRYDPHRINPATDRPYALSTCVCMFIEGAIKHHIRDHGYDVKMPSKWREHYPKVRRLIAEGQTLAQIVEALPVFTEDEITEMLGGMVGTVELEDELTLFSQHQPQAVEVALAPALFALTEAAFTNLRPADRGLLERWAADPFKRPFPSGPMIQFHNRLKTQLRGRTLEQFKQGLLGLDVATIAPAPRERRPRQPRPASVEVVQPSLFARRKPHPKAVKL*
Ga0114349_100008154	F081286	AGGAGG	MAEATSRVALTIPRLALTIAEAAEALGVSERHVKRLVAEADANRRSRWRWGRELIDLAPVGSSRRCVRVNVAAVAPGTGQPSASP*