Scaffold Ga0114337_1018066

Overview

Basic Information

• Taxon OID: 3300008262
• Scaffold ID: Ga0114337_1018066
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4386
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F017998	Metagenome	237	Y
F038234	Metagenome	166	Y
F087181	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114337_10180661	F003542	N/A	MSKVNFDYDLFESKIGYDSLNKQYLIRVYDYLVDEMNNNPAPTWVGIMRKMLGSNPKGVNPSSYYSSVRRCLKEIGVCSFDTTKRYMVKGRNWDRFVSDESWDWFIMRTGSCEYSEVIK*
Ga0114337_101806610	F087181	N/A	MSFGEIVFSAVLAGAVGLWLYGITITDGDTIRRILWDDTMLGWGWRKLFGEKKKAKQAPIPSFQSIPPPPARKLTAKKAAPKGFNTSSLNVPPLNHIGKPLVIKNWARLAGMAVMVFGRRWIVVQAFHASSYEFTLQTGGMTKSVTFSIYGDMYDSHRVSVYCEGRTEIMD
Ga0114337_10180664	F017998	N/A	MNLERLDLNKYEVLEQERNNTFADRGFQQWVSELNISQSYEDREGRIRANDINNQYDYSNLNRNKSAKTGIVYSVISLFK*
Ga0114337_10180665	F038234	N/A	MLVIKNIESLKGTYVGHWKIQYAGIENDTYIIKVLHDGSPFDMFNLMIGRVKTSNGDYLMYCQETGNKHYLPIESIRNSYTFIRFLIDELI*