Scaffold Ga0114337_1000667

Overview

Basic Information

• Taxon OID: 3300008262
• Scaffold ID: Ga0114337_1000667
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30766
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (79.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001799	Metagenome / Metatranscriptome	632	Y
F002487	Metagenome / Metatranscriptome	554	Y
F007203	Metagenome / Metatranscriptome	356	Y
F052464	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114337_100066715	F052464	AGGA	VDTQVQPKEIDDWLKQSVALVAGCVRGLGTNQRKVRYFAFEGQNDKDTK*
Ga0114337_100066721	F002487	GGAG	MTRQDAIKDLSHDDYCCYCTEPKGDKYVCCSENHFVPFEDLYDEDKEAMIEEYLSKGN*
Ga0114337_10006674	F007203	GGA	MYVSMQGVNLAPKVKELEKRLEMLENMVKELQLDKPRMGRPPKDKHGTERVNVDNPIRD*
Ga0114337_100066748	F001799	N/A	AKNLLNDDFFKEVIDNLKKEQISVIINTSGEECDKREDAYRHIKTIELLTGHLEGLASETVIREKKWKIL*