Scaffold Ga0114336_1094304

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1094304
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004134	Metagenome / Metatranscriptome	451	Y
F007919	Metagenome / Metatranscriptome	342	Y
F014121	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10943043	F004134	GGAGG	MTKHPANDWEFDDTIEDAFVDWFHDLYGGYSLRSEWFFGDCEVEDVNTRKDLMYKWLHSAFVVGYNMGRMEGLEVGLTNNED*
Ga0114336_10943045	F007919	N/A	MTERVKFTQVSRVIDPKTSIHYLDAIDENGQHWMAQMETNVEQWITYKKVWYQDPQQPVKL*
Ga0114336_10943049	F014121	N/A	WETFKAELIVEPTEDMKQALASSIRVISSLIHRDGVLDQEPLFIHIADELNELADNVEAL