Scaffold Ga0114336_1080748

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1080748
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1577
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10807484	F006463	N/A	MTSGTTYEQLDWWQRQWRGTFDLGLYLEICRIKKNEQIKYKEMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEQ*
Ga0114336_10807485	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEISQKWETETDDNLQPHVLGVRILEDLRFEMQEAINSDLAHYNFWEWKTSNDDSNYTFYYEL*
Ga0114336_10807486	F034772	N/A	MKNLIDYFTPTTEEHKSFLKHFLGTLTAFIVLGGMFYCLMYLKAL*