Scaffold Ga0114336

Basic Information
Taxon OID	3300008261 Open in IMG/M
Scaffold ID	Ga0114336_1066378 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3262
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3262

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

5.7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F057380	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10663782	F001106	AGGAG	MSFETLKVAELRAVAEDFAVDTDGLKSKADIVAALAEEGVTWSVYQKTIKDIEDAAEEFAETEEILPRFNPDAQPEDTVLVRMTRDNFRYDIIGFTFTKEHPFIAMTEENAQQIFDKEEGFRLATPKEVQEYYN*
Ga0114336_10663783	F057380	N/A	MAEIYVNSNSPIKTKIYWEGELIAPSGNVTAKVYDVTQNPDNVISPTNLLLTLTATPVETDNGTYQIVLPFSYSAYPRNLKIVWEYAMSGPTTGTHTTYVNVVTPYISINEQIDELNFGSDPSDPNYKTYADLQMAERYARKIIEDYTGQDFYLSTDTKIVYGDESDTLPLSSKINRIYQIYSNDILLVDNLASPKINNWLYEPIISETGFGIRVNRTNLLDNSVYVANGFVPPSINDTFNGVFSKNVQYKIVGEFGWDLVPNQVQLATIELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNSSASTGTGNLYADQLLAPHVISQMVLI*
Ga0114336_10663785	F012456	N/A	MAGSAPGVLTDSTVAQVSAFLYYQSSVLGKLSTNAQFKSLFKNTIFDQIEKDFGQYIDSQARVKPNSLHHVYEWNKVGNPAFRLFDLHLIDTGGLSFRVGRDFRLSRSSVPSKNKKQKKRYVFENKASIMEQGMPVVIRPKSAERLVFELDGRVVFMPKGTSVTVKRPGGKAVTNQFSLSFGRFFGGQLVNASIKASGFQRIFNANMAKALSIPVNIRKVQYSFSPGKIRAQADVALSTSFGGVL*
Ga0114336_10663786	F009961	GGAGG	MTVDYKIDAMFELRKFLWNQLKEYNLFDQDDYYSDNLGSEIIPIMPVQQLPEMDQFLNGKKHIVYDKIGMSYEENWLICCEKVLFTLYSTDITEIYEMRNLMVDLFRRMDESAKDVNASRGTDKLIFHSIHVVETSPIDPSTEIQGFLSTDVILEVKYSRVTDGLGRFA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114336_1066378

Overview

Ecosystem & Geography

Associated Families

Sequences