Scaffold Ga0114336_1060892

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1060892
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1907
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010669	Metagenome / Metatranscriptome	300	Y
F012769	Metagenome / Metatranscriptome	277	N
F065718	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10608921	F065718	N/A	LIRLVYSVPLVNGLISYKPLERIWNSKKVIRHIDPGWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLQCSEVKRRYQGMLDATSSEESNSE*
Ga0114336_10608922	F012769	N/A	MQFQYPKFKVRELTKEKYDPILKEEYQEETAIKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEAVIKEVIVQISEWKNRILNRRQKGKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFAGPERKPVKRKIH*
Ga0114336_10608923	F010669	N/A	VELESTRMEQSEDDPTDPSDSEDSNMGISETHWPSDPSEVKRRLYAYIAHEQEILAELLSELESEVQTSSENIIVEKIKRCFRCIDDIIEYATQFLRQARLIEIRDFIGFYYEIENDAKQATRQALTVLSTLRRGNLPRLASSVKELVKELDDIRILVSKKTLEQVEETLQEYGTRRAYTLRQIERLFP*